IL_8RPZ_031

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

8RPZ|1|A|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_031 not in the Motif Atlas

Geometric match to IL_4WF9_018

Geometric discrepancy: 0.3654

The information below is about IL_4WF9_018

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8RPZ|1|A|G|879
8RPZ|1|A|G|880
8RPZ|1|A|G|881
*
8RPZ|1|A|U|895
8RPZ|1|A|A|896
8RPZ|1|A|C|897
8RPZ|1|A|C|898

Current chains

Chain A

23S ribosomal RNA

Nearby chains