IL_8RPZ_033
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CUAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- 8RPZ|1|A|A|1156
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPZ_033 not in the Motif Atlas
- Homologous match to IL_4WF9_036
- Geometric discrepancy: 0.0707
- The information below is about IL_4WF9_036
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_38507.2
- Basepair signature
- cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 16
Unit IDs
8RPZ|1|A|C|998
8RPZ|1|A|U|999
8RPZ|1|A|A|1000
8RPZ|1|A|A|1001
8RPZ|1|A|G|1002
*
8RPZ|1|A|C|1153
8RPZ|1|A|G|1154
8RPZ|1|A|A|1155
8RPZ|1|A|A|1156
8RPZ|1|A|G|1157
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain Q
- Large ribosomal subunit protein bL20
- Chain R
- Large ribosomal subunit protein bL21
- Chain Z
- Large ribosomal subunit protein uL30
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