IL_8RPZ_045

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUGCGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8RPZ|1|A|C|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_045 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0898

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

8RPZ|1|A|C|1208
8RPZ|1|A|U|1209
8RPZ|1|A|G|1210
8RPZ|1|A|C|1211
8RPZ|1|A|G|1212
8RPZ|1|A|A|1213
8RPZ|1|A|A|1214
8RPZ|1|A|G|1215
*
8RPZ|1|A|U|1234
8RPZ|1|A|G|1235
8RPZ|1|A|G|1236
8RPZ|1|A|A|1237
8RPZ|1|A|G|1238

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain Q

Large ribosomal subunit protein bL20