IL_8RPZ_053

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAAG*CCUGC

Length

9 nucleotides

Bulged bases

8RPZ|1|A|U|1559

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_053 not in the Motif Atlas

Homologous match to IL_5J7L_296

Geometric discrepancy: 0.1362

The information below is about IL_5J7L_296

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_58112.2

Basepair signature

cWW-cWW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8RPZ|1|A|G|1432
8RPZ|1|A|A|1433
8RPZ|1|A|A|1434
8RPZ|1|A|G|1435
*
8RPZ|1|A|C|1557
8RPZ|1|A|C|1558
8RPZ|1|A|U|1559
8RPZ|1|A|G|1560
8RPZ|1|A|C|1561

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2