IL_8RPZ_100

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8RPZ|1|A|G|2576, 8RPZ|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_100 not in the Motif Atlas

Homologous match to IL_5J7L_340

Geometric discrepancy: 0.0853

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8RPZ|1|A|C|2510
8RPZ|1|A|U|2511
8RPZ|1|A|C|2512
*
8RPZ|1|A|G|2574
8RPZ|1|A|C|2575
8RPZ|1|A|G|2576
8RPZ|1|A|A|2577
8RPZ|1|A|G|2578

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain z

Apidaecins type 88