IL_8RPZ_109
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GAUAAG*CGAAAC
- Length
- 12 nucleotides
- Bulged bases
- 8RPZ|1|A|A|2765
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPZ_109 not in the Motif Atlas
- Homologous match to IL_5J7L_350
- Geometric discrepancy: 0.0667
- The information below is about IL_5J7L_350
- Detailed Annotation
- UAA/GAN with extra cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_49767.8
- Basepair signature
- cWW-cWW-tWH-L-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RPZ|1|A|G|2737
8RPZ|1|A|A|2738
8RPZ|1|A|U|2739
8RPZ|1|A|A|2740
8RPZ|1|A|A|2741
8RPZ|1|A|G|2742
*
8RPZ|1|A|C|2762
8RPZ|1|A|G|2763
8RPZ|1|A|A|2764
8RPZ|1|A|A|2765
8RPZ|1|A|A|2766
8RPZ|1|A|C|2767
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36A
- Chain G
- Large ribosomal subunit protein uL6
- Chain J
- Large ribosomal subunit protein uL13
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