IL_8RPZ_116
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- GGUCCC*GAAAC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPZ_116 not in the Motif Atlas
- Homologous match to IL_5J7L_356
- Geometric discrepancy: 0.1479
- The information below is about IL_5J7L_356
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_18472.4
- Basepair signature
- cWW-tSW-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RPZ|1|B|G|23
8RPZ|1|B|G|24
8RPZ|1|B|U|25
8RPZ|1|B|C|26
8RPZ|1|B|C|27
8RPZ|1|B|C|28
*
8RPZ|1|B|G|56
8RPZ|1|B|A|57
8RPZ|1|B|A|58
8RPZ|1|B|A|59
8RPZ|1|B|C|60
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain F
- Large ribosomal subunit protein uL5
- Chain O
- Large ribosomal subunit protein uL18
Coloring options: