IL_8RPZ_118
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- ACCCC*GAACU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPZ_118 not in the Motif Atlas
- Homologous match to IL_5J7L_358
- Geometric discrepancy: 0.2204
- The information below is about IL_5J7L_358
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.11
- Basepair signature
- cWW-cSH-cWS-L-tSW-R-R-cWW
- Number of instances in this motif group
- 9
Unit IDs
8RPZ|1|B|A|34
8RPZ|1|B|C|35
8RPZ|1|B|C|36
8RPZ|1|B|C|37
8RPZ|1|B|C|38
*
8RPZ|1|B|G|44
8RPZ|1|B|A|45
8RPZ|1|B|A|46
8RPZ|1|B|C|47
8RPZ|1|B|U|48
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL31
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain O
- Large ribosomal subunit protein uL18
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