IL_8RPZ_119
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CGAUGGUAG*CGAGAGUAG
- Length
- 18 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPZ_119 not in the Motif Atlas
- Homologous match to IL_5J7L_359
- Geometric discrepancy: 0.0639
- The information below is about IL_5J7L_359
- Detailed Annotation
- Bacterial 5S Loop E
- Broad Annotation
- Loop E
- Motif group
- IL_56455.6
- Basepair signature
- cWW-tSH-tHW-L-R-L-R-L-R-tWH-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RPZ|1|B|C|71
8RPZ|1|B|G|72
8RPZ|1|B|A|73
8RPZ|1|B|U|74
8RPZ|1|B|G|75
8RPZ|1|B|G|76
8RPZ|1|B|U|77
8RPZ|1|B|A|78
8RPZ|1|B|G|79
*
8RPZ|1|B|C|97
8RPZ|1|B|G|98
8RPZ|1|B|A|99
8RPZ|1|B|G|100
8RPZ|1|B|A|101
8RPZ|1|B|G|102
8RPZ|1|B|U|103
8RPZ|1|B|A|104
8RPZ|1|B|G|105
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain M
- Large ribosomal subunit protein uL16
- Chain V
- Large ribosomal subunit protein bL25
- Chain Z
- Large ribosomal subunit protein uL30
Coloring options: