IL_8RPZ_121
3D structure
- PDB id
- 8RPZ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.44 Å
Loop
- Sequence
- CCCAGACAG*UCGAG
- Length
- 14 nucleotides
- Bulged bases
- 8RPZ|1|A|C|1045, 8RPZ|1|A|A|1046
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RPZ_121 not in the Motif Atlas
- Homologous match to IL_5J7L_284
- Geometric discrepancy: 0.2685
- The information below is about IL_5J7L_284
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_99692.2
- Basepair signature
- cWW-tSS-tSH-L-R-R-L-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8RPZ|1|A|C|1043
8RPZ|1|A|C|1044
8RPZ|1|A|C|1045
8RPZ|1|A|A|1046
8RPZ|1|A|G|1047
8RPZ|1|A|A|1048
8RPZ|1|A|C|1049
8RPZ|1|A|A|1050
8RPZ|1|A|G|1051
*
8RPZ|1|A|U|1108
8RPZ|1|A|C|1109
8RPZ|1|A|G|1110
8RPZ|1|A|A|1111
8RPZ|1|A|G|1112
Current chains
- Chain A
- 23S ribosomal RNA
Nearby chains
- Chain 4
- Large ribosomal subunit protein bL36A
- Chain G
- Large ribosomal subunit protein uL6
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