IL_8RPZ_124

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPZ_124 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.1704

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8RPZ|1|A|U|1851
8RPZ|1|A|U|1852
8RPZ|1|A|A|1853
8RPZ|1|A|A|1854
8RPZ|1|A|U|1855
8RPZ|1|A|U|1856
8RPZ|1|A|G|1857
8RPZ|1|A|A|1858
8RPZ|1|A|U|1859
8RPZ|1|A|G|1860
*
8RPZ|1|A|U|1882
8RPZ|1|A|U|1883
8RPZ|1|A|G|1884
8RPZ|1|A|A|1885
8RPZ|1|A|U|1886
8RPZ|1|A|C|1887
8RPZ|1|A|G|1888
8RPZ|1|A|A|1889
8RPZ|1|A|A|1890
8RPZ|1|A|G|1891

Current chains

Chain A

23S ribosomal RNA

Nearby chains