IL_8RQ0_010

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

UAG*CAAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ0_010 not in the Motif Atlas

Homologous match to IL_5J7L_254

Geometric discrepancy: 0.1252

The information below is about IL_5J7L_254

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69440.3

Basepair signature

cWW-L-R-cSH-cWW

Number of instances in this motif group

3

Unit IDs

8RQ0|1|A|U|293
8RQ0|1|A|A|294
8RQ0|1|A|G|295
*
8RQ0|1|A|C|343
8RQ0|1|A|A|344
8RQ0|1|A|A|345
8RQ0|1|A|A|346
8RQ0|1|A|A|347

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain U

Large ribosomal subunit protein uL24