IL_8RQ0_016

3D structure

PDB id

8RQ0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation II

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

8RQ0|1|A|G|801, 8RQ0|1|A|G|805

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ0_016 not in the Motif Atlas

Geometric match to IL_7RQB_018

Geometric discrepancy: 0.0782

The information below is about IL_7RQB_018

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.6

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8RQ0|1|A|G|674
8RQ0|1|A|A|675
8RQ0|1|A|A|676
8RQ0|1|A|A|677
8RQ0|1|A|C|678
*
8RQ0|1|A|G|799
8RQ0|1|A|A|800
8RQ0|1|A|G|801
8RQ0|1|A|A|802
8RQ0|1|A|U|803
8RQ0|1|A|A|804
8RQ0|1|A|G|805
8RQ0|1|A|C|806

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain E

Large ribosomal subunit protein uL4

Chain L

Large ribosomal subunit protein uL15