3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CUAAG*CGAAG
Length
10 nucleotides
Bulged bases
8RQ2|1|A|A|1156
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RQ2_033 not in the Motif Atlas
Homologous match to IL_4WF9_036
Geometric discrepancy: 0.0707
The information below is about IL_4WF9_036
Detailed Annotation
UAA/GAN
Broad Annotation
No text annotation
Motif group
IL_38507.2
Basepair signature
cWW-tWH-L-tHS-cWW
Number of instances in this motif group
16

Unit IDs

8RQ2|1|A|C|998
8RQ2|1|A|U|999
8RQ2|1|A|A|1000
8RQ2|1|A|A|1001
8RQ2|1|A|G|1002
*
8RQ2|1|A|C|1153
8RQ2|1|A|G|1154
8RQ2|1|A|A|1155
8RQ2|1|A|A|1156
8RQ2|1|A|G|1157

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain B
5S ribosomal RNA; 5S rRNA
Chain Q
Large ribosomal subunit protein bL20
Chain R
Large ribosomal subunit protein bL21
Chain Z
Large ribosomal subunit protein uL30

Coloring options:


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