IL_8RQ2_039

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAAG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_039 not in the Motif Atlas

Homologous match to IL_5J7L_283

Geometric discrepancy: 0.1699

The information below is about IL_5J7L_283

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_85033.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

35

Unit IDs

8RQ2|1|A|G|1038
8RQ2|1|A|A|1039
8RQ2|1|A|A|1040
8RQ2|1|A|G|1041
*
8RQ2|1|A|C|1114
8RQ2|1|A|G|1115
8RQ2|1|A|G|1116
8RQ2|1|A|C|1117

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain G

Large ribosomal subunit protein uL6

Chain M

Large ribosomal subunit protein uL16

Chain V

Large ribosomal subunit protein bL25