3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
CUGCGAAG*UGGAG
Length
13 nucleotides
Bulged bases
8RQ2|1|A|C|1211
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RQ2_045 not in the Motif Atlas
Homologous match to IL_5J7L_288
Geometric discrepancy: 0.0898
The information below is about IL_5J7L_288
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.9
Basepair signature
cWW-tSS-tSH-L-tHS-tHS-cWW
Number of instances in this motif group
27

Unit IDs

8RQ2|1|A|C|1208
8RQ2|1|A|U|1209
8RQ2|1|A|G|1210
8RQ2|1|A|C|1211
8RQ2|1|A|G|1212
8RQ2|1|A|A|1213
8RQ2|1|A|A|1214
8RQ2|1|A|G|1215
*
8RQ2|1|A|U|1234
8RQ2|1|A|G|1235
8RQ2|1|A|G|1236
8RQ2|1|A|A|1237
8RQ2|1|A|G|1238

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain Q
Large ribosomal subunit protein bL20

Coloring options:


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