3D structure

PDB id
8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III
Experimental method
ELECTRON MICROSCOPY
Resolution
2.44 Å

Loop

Sequence
UGUAG*UGAGG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RQ2_057 not in the Motif Atlas
Homologous match to IL_5J7L_300
Geometric discrepancy: 0.1011
The information below is about IL_5J7L_300
Detailed Annotation
tSH-tHW-tHS
Broad Annotation
No text annotation
Motif group
IL_38862.4
Basepair signature
cWW-cSH-R-tWH-tHS-cWW
Number of instances in this motif group
5

Unit IDs

8RQ2|1|A|U|1474
8RQ2|1|A|G|1475
8RQ2|1|A|U|1476
8RQ2|1|A|A|1477
8RQ2|1|A|G|1478
*
8RQ2|1|A|U|1513
8RQ2|1|A|G|1514
8RQ2|1|A|A|1515
8RQ2|1|A|G|1516
8RQ2|1|A|G|1517

Current chains

Chain A
23S ribosomal RNA

Nearby chains

No other chains within 10Å

Coloring options:


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