IL_8RQ2_100

3D structure

PDB id

8RQ2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation III

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

CUC*GCGAG

Length

8 nucleotides

Bulged bases

8RQ2|1|A|G|2576, 8RQ2|1|A|A|2577

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RQ2_100 not in the Motif Atlas

Geometric match to IL_5J7L_340

Geometric discrepancy: 0.0853

The information below is about IL_5J7L_340

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8RQ2|1|A|C|2510
8RQ2|1|A|U|2511
8RQ2|1|A|C|2512
*
8RQ2|1|A|G|2574
8RQ2|1|A|C|2575
8RQ2|1|A|G|2576
8RQ2|1|A|A|2577
8RQ2|1|A|G|2578

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain 0

Large ribosomal subunit protein bL32

Chain D

Large ribosomal subunit protein uL3

Chain z

Apidaecins type 88