IL_8RRI_017

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUAG*CACC

Length

8 nucleotides

Bulged bases

8RRI|1|A|A|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_017 not in the Motif Atlas

Homologous match to IL_5J7L_285

Geometric discrepancy: 0.1749

The information below is about IL_5J7L_285

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

8RRI|1|A|G|2170
8RRI|1|A|U|2171
8RRI|1|A|A|2172
8RRI|1|A|G|2173
*
8RRI|1|A|C|2187
8RRI|1|A|A|2188
8RRI|1|A|C|2189
8RRI|1|A|C|2190

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain J

39S ribosomal protein L11, mitochondrial

Chain N

39S ribosomal protein L16, mitochondrial

Chain l

39S ribosomal protein L54, mitochondrial