IL_8RRI_037

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

8RRI|1|A|A|2926

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_037 not in the Motif Atlas

Homologous match to IL_9DFE_081

Geometric discrepancy: 0.0779

The information below is about IL_9DFE_081

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_98469.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

37

Unit IDs

8RRI|1|A|G|2733
8RRI|1|A|A|2734
*
8RRI|1|A|U|2925
8RRI|1|A|A|2926
8RRI|1|A|C|2927
8RRI|1|A|C|2928

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain Ax

Transfer RNA; tRNA