IL_8RRI_038

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UAU*AA

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_038 not in the Motif Atlas

Geometric match to IL_8T29_003

Geometric discrepancy: 0.3544

The information below is about IL_8T29_003

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_75289.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8RRI|1|A|U|2744
8RRI|1|A|A|2745
8RRI|1|A|U|2746
*
8RRI|1|A|A|2802
8RRI|1|A|A|2803

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain X

39S ribosomal protein L28, mitochondrial