IL_8RRI_047

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AUC*GUGAU

Length

8 nucleotides

Bulged bases

8RRI|1|A|G|3063, 8RRI|1|A|A|3064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_047 not in the Motif Atlas

Homologous match to IL_4WF9_095

Geometric discrepancy: 0.2174

The information below is about IL_4WF9_095

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

31

Unit IDs

8RRI|1|A|A|2997
8RRI|1|A|U|2998
8RRI|1|A|C|2999
*
8RRI|1|A|G|3061
8RRI|1|A|U|3062
8RRI|1|A|G|3063
8RRI|1|A|A|3064
8RRI|1|A|U|3065

Current chains

Chain A

16S mitochondrial rRNA

Nearby chains

Chain 0

39S ribosomal protein L32, mitochondrial

Chain E

39S ribosomal protein L3, mitochondrial