IL_8RRI_063
3D structure
- PDB id
- 8RRI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with antibiotic tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GCACG*CAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RRI_063 not in the Motif Atlas
- Geometric match to IL_4WF9_029
- Geometric discrepancy: 0.3751
- The information below is about IL_4WF9_029
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_01742.1
- Basepair signature
- cWW-L-cWW-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RRI|1|AA|G|762
8RRI|1|AA|C|763
8RRI|1|AA|A|764
8RRI|1|AA|C|765
8RRI|1|AA|G|766
*
8RRI|1|AA|C|775
8RRI|1|AA|A|776
8RRI|1|AA|G|777
8RRI|1|AA|C|778
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain A0
- 28S ribosomal protein S34, mitochondrial
- Chain A3
- Aurora kinase A-interacting protein
- Chain AL
- 28S ribosomal protein S15, mitochondrial
- Chain AN
- 28S ribosomal protein S17, mitochondrial
Coloring options: