IL_8RRI_067
3D structure
- PDB id
- 8RRI (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human mitochondrial ribosome in complex with antibiotic tigecycline
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.4 Å
Loop
- Sequence
- GUGCCAG*CGGUCACAC
- Length
- 16 nucleotides
- Bulged bases
- 8RRI|1|AA|C|904, 8RRI|1|AA|C|906, 8RRI|1|AA|A|907
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RRI_067 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.2767
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.1
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 5
Unit IDs
8RRI|1|AA|G|887
8RRI|1|AA|U|888
8RRI|1|AA|G|889
8RRI|1|AA|C|890
8RRI|1|AA|C|891
8RRI|1|AA|A|892
8RRI|1|AA|G|893
*
8RRI|1|AA|C|900
8RRI|1|AA|G|901
8RRI|1|AA|G|902
8RRI|1|AA|U|903
8RRI|1|AA|C|904
8RRI|1|AA|A|905
8RRI|1|AA|C|906
8RRI|1|AA|A|907
8RRI|1|AA|C|908
Current chains
- Chain AA
- 12S mitochondrial rRNA
Nearby chains
- Chain AD
- 28S ribosomal protein S5, mitochondrial
- Chain AJ
- 28S ribosomal protein S12, mitochondrial
- Chain AZ
- 28S ribosomal protein S33, mitochondrial
- Chain Az
- mRNA
Coloring options: