IL_8RRI_076

3D structure

PDB id

8RRI (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human mitochondrial ribosome in complex with antibiotic tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AAACU*ACUAU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RRI_076 not in the Motif Atlas

Geometric match to IL_6CZR_135

Geometric discrepancy: 0.2139

The information below is about IL_6CZR_135

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

8RRI|1|AA|A|1067
8RRI|1|AA|A|1068
8RRI|1|AA|A|1069
8RRI|1|AA|C|1070
8RRI|1|AA|U|1071
*
8RRI|1|AA|A|1087
8RRI|1|AA|C|1088
8RRI|1|AA|U|1089
8RRI|1|AA|A|1090
8RRI|1|AA|U|1091

Current chains

Chain AA

12S mitochondrial rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain AI

28S ribosomal protein S11, mitochondrial

Chain AQ

Small ribosomal subunit protein bS21m