IL_8RW1_012

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

GGAUAUC*GCUAAUAC

Length

15 nucleotides

Bulged bases

8RW1|1|2|U|169

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_012 not in the Motif Atlas

Homologous match to IL_8C3A_402

Geometric discrepancy: 0.1224

The information below is about IL_8C3A_402

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80604.4

Basepair signature

cWW-L-R-tWH-tWH-tHW-L-R-cWW

Number of instances in this motif group

4

Unit IDs

8RW1|1|2|G|142
8RW1|1|2|G|143
8RW1|1|2|A|144
8RW1|1|2|U|145
8RW1|1|2|A|146
8RW1|1|2|U|147
8RW1|1|2|C|148
*
8RW1|1|2|G|164
8RW1|1|2|C|165
8RW1|1|2|U|166
8RW1|1|2|A|167
8RW1|1|2|A|168
8RW1|1|2|U|169
8RW1|1|2|A|170
8RW1|1|2|C|171

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain G

Small ribosomal subunit protein eS6

Chain Y

40S ribosomal protein S24