IL_8RW1_074

3D structure

PDB id

8RW1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a yeast 48S-AUC preinitiation complex in closed conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

3.35 Å

Loop

Sequence

AAUA*UUCU

Length

8 nucleotides

Bulged bases

8RW1|1|2|A|1345, 8RW1|1|2|U|1346

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RW1_074 not in the Motif Atlas

Homologous match to IL_8C3A_462

Geometric discrepancy: 0.2085

The information below is about IL_8C3A_462

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_25234.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

8RW1|1|2|A|1344
8RW1|1|2|A|1345
8RW1|1|2|U|1346
8RW1|1|2|A|1347
*
8RW1|1|2|U|1375
8RW1|1|2|U|1376
8RW1|1|2|C|1377
8RW1|1|2|U|1378

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

Small ribosomal subunit protein uS9

Chain U

Small ribosomal subunit protein uS10