IL_8RW1_077
3D structure
- PDB id
- 8RW1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of a yeast 48S-AUC preinitiation complex in closed conformation
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.35 Å
Loop
- Sequence
- GCCAGCGA*UUGUGAAAC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RW1_077 not in the Motif Atlas
- Homologous match to IL_8P9A_448
- Geometric discrepancy: 0.1446
- The information below is about IL_8P9A_448
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_91698.1
- Basepair signature
- cWW-tWW-L-R-L-R-L-R-L-tHW-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RW1|1|2|G|1478
8RW1|1|2|C|1479
8RW1|1|2|C|1480
8RW1|1|2|A|1481
8RW1|1|2|G|1482
8RW1|1|2|C|1483
8RW1|1|2|G|1484
8RW1|1|2|A|1485
*
8RW1|1|2|U|1517
8RW1|1|2|U|1518
8RW1|1|2|G|1519
8RW1|1|2|U|1520
8RW1|1|2|G|1521
8RW1|1|2|A|1522
8RW1|1|2|A|1523
8RW1|1|2|A|1524
8RW1|1|2|C|1525
Current chains
- Chain 2
- 18S ribosomal RNA
Nearby chains
- Chain D
- 40S ribosomal protein S3
- Chain F
- KLLA0D10659p
- Chain Q
- Small ribosomal subunit protein uS9
- Chain T
- KLLA0A07194p
- Chain U
- Small ribosomal subunit protein uS10
- Chain Z
- 40S ribosomal protein S25
- Chain d
- Small ribosomal subunit protein uS14
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