IL_8RXH_003
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CUG*C(A2M)G
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_003 not in the Motif Atlas
- Geometric match to IL_5Y7M_007
- Geometric discrepancy: 0.1499
- The information below is about IL_5Y7M_007
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
8RXH|1|L1|C|7
8RXH|1|L1|U|8
8RXH|1|L1|G|9
*
8RXH|1|L7|C|161
8RXH|1|L7|A2M|162
8RXH|1|L7|G|163
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L7
- 5.8S_rRNA_chain_7
Nearby chains
- Chain LG
- 60S ribosomal protein L7a
- Chain LM
- Ribosomal protein L15
- Chain LV
- Putative 60S ribosomal protein L23a
Coloring options: