IL_8RXH_006
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CCGAACUU*AUUAC(OMU)CAG
- Length
- 17 nucleotides
- Bulged bases
- 8RXH|1|L1|C|47
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_006 not in the Motif Atlas
- Homologous match to IL_5TBW_005
- Geometric discrepancy: 0.0773
- The information below is about IL_5TBW_005
- Detailed Annotation
- tSH-tHW-tHH-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RXH|1|L1|C|29
8RXH|1|L1|C|30
8RXH|1|L1|G|31
8RXH|1|L1|A|32
8RXH|1|L1|A|33
8RXH|1|L1|C|34
8RXH|1|L1|U|35
8RXH|1|L1|U|36
*
8RXH|1|L1|A|43
8RXH|1|L1|U|44
8RXH|1|L1|U|45
8RXH|1|L1|A|46
8RXH|1|L1|C|47
8RXH|1|L1|OMU|48
8RXH|1|L1|C|49
8RXH|1|L1|A|50
8RXH|1|L1|G|51
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain LI
- Putative 60S ribosomal protein L13
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain LM
- Ribosomal protein L15
- Chain Lj
- Ribosomal protein L37
- Chain Lp
- Putative 60S ribosomal protein L44
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