IL_8RXH_009

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CGAA*UG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_009 not in the Motif Atlas

Geometric match to IL_5J7L_306

Geometric discrepancy: 0.1378

The information below is about IL_5J7L_306

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

Major groove platform

Motif group

IL_50694.7

Basepair signature

cWW-tSH-cWW-L

Number of instances in this motif group

27

Unit IDs

8RXH|1|L1|C|119
8RXH|1|L1|G|120
8RXH|1|L1|A|121
8RXH|1|L1|A|122
*
8RXH|1|L1|U|148
8RXH|1|L1|G|149

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LG

60S ribosomal protein L7a

Chain LM

Ribosomal protein L15

Chain La

Putative 60S ribosomal protein L35