IL_8RXH_015

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UUC*GA

Length

5 nucleotides

Bulged bases

8RXH|1|L1|U|191

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_015 not in the Motif Atlas

Homologous match to IL_8C3A_013

Geometric discrepancy: 0.3162

The information below is about IL_8C3A_013

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8RXH|1|L1|U|190
8RXH|1|L1|U|191
8RXH|1|L1|C|192
*
8RXH|1|L1|G|241
8RXH|1|L1|A|242

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LW

Putative 60S ribosomal protein L26

Chain LZ

Putative 60S ribosomal protein L28