IL_8RXH_018
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- AGGA*UCCU
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Self-complementary:
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_018 not in the Motif Atlas
- Geometric match to IL_4EYA_008
- Geometric discrepancy: 0.2483
- The information below is about IL_4EYA_008
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_65740.1
- Basepair signature
- cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RXH|1|L1|A|372
8RXH|1|L1|G|373
8RXH|1|L1|G|374
8RXH|1|L1|A|375
*
8RXH|1|L7|U|27
8RXH|1|L7|C|28
8RXH|1|L7|C|29
8RXH|1|L7|U|30
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L7
- 5.8S_rRNA_chain_7
Nearby chains
- Chain LC
- Putative ribosomal protein L1a
- Chain LI
- Putative 60S ribosomal protein L13
- Chain LW
- Putative 60S ribosomal protein L26
- Chain Lj
- Ribosomal protein L37
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