IL_8RXH_019

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GAC*GC

Length

5 nucleotides

Bulged bases

8RXH|1|L1|A|378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_019 not in the Motif Atlas

Homologous match to IL_8C3A_014

Geometric discrepancy: 0.1329

The information below is about IL_8C3A_014

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8RXH|1|L1|G|377
8RXH|1|L1|A|378
8RXH|1|L1|C|379
*
8RXH|1|L7|G|24
8RXH|1|L7|C|25

Current chains

Chain L1

LSUa_rRNA_chain_1

Chain L7

5.8S_rRNA_chain_7

Nearby chains

Chain LC

Putative ribosomal protein L1a

Chain LW

Putative 60S ribosomal protein L26