IL_8RXH_021
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GCAC*GAGUGAAAUAGAAC
- Length
- 18 nucleotides
- Bulged bases
- 8RXH|1|L1|U|439, 8RXH|1|L1|A|443
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_021 not in the Motif Atlas
- Homologous match to IL_8C3A_015
- Geometric discrepancy: 0.1422
- The information below is about IL_8C3A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
8RXH|1|L1|G|417
8RXH|1|L1|C|418
8RXH|1|L1|A|419
8RXH|1|L1|C|420
*
8RXH|1|L1|G|431
8RXH|1|L1|A|432
8RXH|1|L1|G|433
8RXH|1|L1|U|434
8RXH|1|L1|G|435
8RXH|1|L1|A|436
8RXH|1|L1|A|437
8RXH|1|L1|A|438
8RXH|1|L1|U|439
8RXH|1|L1|A|440
8RXH|1|L1|G|441
8RXH|1|L1|A|442
8RXH|1|L1|A|443
8RXH|1|L1|C|444
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LT
- Putative 60S ribosomal protein L17
- Chain LW
- Putative 60S ribosomal protein L26
- Chain Ll
- Putative 60S ribosomal protein L39
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