IL_8RXH_025

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CUCC*GGG

Length

7 nucleotides

Bulged bases

8RXH|1|L1|C|477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_025 not in the Motif Atlas

Geometric match to IL_4WF9_044

Geometric discrepancy: 0.2383

The information below is about IL_4WF9_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.5

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

23

Unit IDs

8RXH|1|L1|C|475
8RXH|1|L1|U|476
8RXH|1|L1|C|477
8RXH|1|L1|C|478
*
8RXH|1|L1|G|656
8RXH|1|L1|G|657
8RXH|1|L1|G|658

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L4

Large subunit ribosomal RNA; LSU rRNA

Chain L7

5.8S ribosomal RNA; 5.8S rRNA

Chain Lf

60S ribosomal protein L32

Chain Lg

Putative ribosomal protein l35a