IL_8RXH_038

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAC*GCACG

Length

8 nucleotides

Bulged bases

8RXH|1|L1|C|611

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_038 not in the Motif Atlas

Geometric match to IL_8C3A_508

Geometric discrepancy: 0.3149

The information below is about IL_8C3A_508

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07195.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

5

Unit IDs

8RXH|1|L1|C|595
8RXH|1|L1|A|596
8RXH|1|L1|C|597
*
8RXH|1|L1|G|608
8RXH|1|L1|C|609
8RXH|1|L1|A|610
8RXH|1|L1|C|611
8RXH|1|L1|G|612

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LC

Putative ribosomal protein L1a

Chain LS

Putative 60S ribosomal protein L21

Chain Lc

Putative 60S ribosomal protein L7