IL_8RXH_045

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

G(PSU)G*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_045 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.1206

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

8RXH|1|L1|G|773
8RXH|1|L1|PSU|774
8RXH|1|L1|G|775
*
8RXH|1|L1|C|807
8RXH|1|L1|A|808
8RXH|1|L1|C|809

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LP

60S ribosomal protein L18

Chain LS

Putative 60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29