IL_8RXH_047

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

ACG*UUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_047 not in the Motif Atlas

Geometric match to IL_3RW6_004

Geometric discrepancy: 0.1854

The information below is about IL_3RW6_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RXH|1|L1|A|781
8RXH|1|L1|C|782
8RXH|1|L1|G|783
*
8RXH|1|L1|U|798
8RXH|1|L1|U|799
8RXH|1|L1|U|800

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LP

60S ribosomal protein L18

Chain Lb

60S ribosomal protein L29