IL_8RXH_064
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- CGGUAA*UAAA(OMU)G
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_064 not in the Motif Atlas
- Geometric match to IL_7A0S_027
- Geometric discrepancy: 0.1804
- The information below is about IL_7A0S_027
- Detailed Annotation
- 5x5 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_81631.1
- Basepair signature
- cWW-L-R-cSH-R-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RXH|1|L1|C|1043
8RXH|1|L1|G|1044
8RXH|1|L1|G|1045
8RXH|1|L1|U|1046
8RXH|1|L1|A|1047
8RXH|1|L1|A|1048
*
8RXH|1|L1|U|1103
8RXH|1|L1|A|1104
8RXH|1|L1|A|1105
8RXH|1|L1|A|1106
8RXH|1|L1|OMU|1107
8RXH|1|L1|G|1108
Current chains
- Chain L1
- LSUa_rRNA_chain_1
Nearby chains
- Chain L2
- Large subunit ribosomal RNA; LSU rRNA
- Chain L8
- 5S ribosomal RNA; 5S rRNA
- Chain LN
- Putative 60S ribosomal protein L10
- Chain LO
- Putative 60S ribosomal protein L5
- Chain LS
- Putative 60S ribosomal protein L21
- Chain Lc
- Putative 60S ribosomal protein L7
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