IL_8RXH_070

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UAG*CA

Length

5 nucleotides

Bulged bases

8RXH|1|L1|A|1128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_070 not in the Motif Atlas

Geometric match to IL_4P43_002

Geometric discrepancy: 0.1884

The information below is about IL_4P43_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8RXH|1|L1|U|1127
8RXH|1|L1|A|1128
8RXH|1|L1|G|1129
*
8RXH|1|L1|C|1137
8RXH|1|L1|A|1138

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain LO

Putative 60S ribosomal protein L5

Chain LS

Putative 60S ribosomal protein L21

Chain Lb

60S ribosomal protein L29