IL_8RXH_087

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

GC*GAU

Length

5 nucleotides

Bulged bases

8RXH|1|L1|A|1504

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_087 not in the Motif Atlas

Geometric match to IL_5TBW_024

Geometric discrepancy: 0.3522

The information below is about IL_5TBW_024

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8RXH|1|L1|G|1484
8RXH|1|L1|C|1485
*
8RXH|1|L1|G|1503
8RXH|1|L1|A|1504
8RXH|1|L1|U|1505

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L4

Large subunit ribosomal RNA; LSU rRNA

Chain L7

5.8S ribosomal RNA; 5.8S rRNA

Chain Lf

60S ribosomal protein L32