IL_8RXH_088

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

UAUG*CUA

Length

7 nucleotides

Bulged bases

8RXH|1|L1|A|1488

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_088 not in the Motif Atlas

Homologous match to IL_8C3A_064

Geometric discrepancy: 0.4964

The information below is about IL_8C3A_064

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8RXH|1|L1|U|1487
8RXH|1|L1|A|1488
8RXH|1|L1|U|1489
8RXH|1|L1|G|1490
*
8RXH|1|L1|C|1499
8RXH|1|L1|U|1500
8RXH|1|L1|A|1501

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L7

5.8S ribosomal RNA; 5.8S rRNA

Chain LZ

Putative 60S ribosomal protein L28

Chain Lf

60S ribosomal protein L32