IL_8RXH_090
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GAUU*AC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_090 not in the Motif Atlas
- Geometric match to IL_5J7L_290
- Geometric discrepancy: 0.1339
- The information below is about IL_5J7L_290
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_50694.7
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 27
Unit IDs
8RXH|1|L1|G|1597
8RXH|1|L1|A|1598
8RXH|1|L1|U|1599
8RXH|1|L1|U|1600
*
8RXH|1|L2|A|18
8RXH|1|L2|C|19
Current chains
- Chain L1
- LSUa_rRNA_chain_1
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L7
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LV
- Putative 60S ribosomal protein L23a
- Chain Lh
- Putative 60S ribosomal protein L34
- Chain Lj
- Ribosomal protein L37
- Chain Ll
- Putative 60S ribosomal protein L39
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