IL_8RXH_093

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_093 not in the Motif Atlas

Geometric match to IL_5UNE_004

Geometric discrepancy: 0.2622

The information below is about IL_5UNE_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RXH|1|L1|C|1643
8RXH|1|L1|A|1644
8RXH|1|L1|C|1645
*
8RXH|1|L1|G|1732
8RXH|1|L1|G|1733
8RXH|1|L1|G|1734

Current chains

Chain L1

LSUa_rRNA_chain_1

Nearby chains

Chain L7

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

Putative 60S ribosomal protein L2

Chain LV

Putative 60S ribosomal protein L23a

Chain Lj

Ribosomal protein L37