IL_8RXH_106
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- GCU*AAC
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_106 not in the Motif Atlas
- Homologous match to IL_8C3A_085
- Geometric discrepancy: 0.0833
- The information below is about IL_8C3A_085
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
8RXH|1|L2|G|124
8RXH|1|L2|C|125
8RXH|1|L2|U|126
*
8RXH|1|L2|A|354
8RXH|1|L2|A|355
8RXH|1|L2|C|356
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L4
- Large subunit ribosomal RNA; LSU rRNA
- Chain L5
- SR4_chain_5
- Chain LQ
- Putative 60S ribosomal protein L19
- Chain LU
- Putative 60S ribosomal protein L22
- Chain S1
- Small subunit ribosomal RNA; SSU rRNA
- Chain SK
- 40S ribosomal protein S8
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