IL_8RXH_113

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

C(OMC)AG*CG

Length

6 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_113 not in the Motif Atlas

Homologous match to IL_5TBW_084

Geometric discrepancy: 0.093

The information below is about IL_5TBW_084

Detailed Annotation

Major groove intercalation

Broad Annotation

No text annotation

Motif group

IL_88739.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

12

Unit IDs

8RXH|1|L2|C|442
8RXH|1|L2|OMC|443
8RXH|1|L2|A|444
8RXH|1|L2|G|445
*
8RXH|1|L2|C|491
8RXH|1|L2|G|492

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain LA

Putative 60S ribosomal protein L2

Chain S1

Small subunit ribosomal RNA; SSU rRNA