IL_8RXH_125
3D structure
- PDB id
- 8RXH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.93 Å
Loop
- Sequence
- U(OMG)UU*ACA
- Length
- 7 nucleotides
- Bulged bases
- 8RXH|1|L2|U|656
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RXH_125 not in the Motif Atlas
- Geometric match to IL_3GM7_006
- Geometric discrepancy: 0.1813
- The information below is about IL_3GM7_006
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_01003.4
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 215
Unit IDs
8RXH|1|L2|U|654
8RXH|1|L2|OMG|655
8RXH|1|L2|U|656
8RXH|1|L2|U|657
*
8RXH|1|L2|A|1249
8RXH|1|L2|C|1250
8RXH|1|L2|A|1251
Current chains
- Chain L2
- LSUb_rRNA_chain_2
Nearby chains
- Chain L1
- Large subunit ribosomal RNA; LSU rRNA
- Chain LC
- Putative ribosomal protein L1a
- Chain LL
- Putative 60S ribosomal protein L27A/L29
- Chain Lb
- 60S ribosomal protein L29
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