IL_8RXH_128

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

CAG*UGGG

Length

7 nucleotides

Bulged bases

8RXH|1|L2|G|1033

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_128 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.2447

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8RXH|1|L2|C|669
8RXH|1|L2|A|670
8RXH|1|L2|G|671
*
8RXH|1|L2|U|1031
8RXH|1|L2|G|1032
8RXH|1|L2|G|1033
8RXH|1|L2|G|1034

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain L1

Large subunit ribosomal RNA; LSU rRNA

Chain LA

Putative 60S ribosomal protein L2

Chain LM

Ribosomal protein L15

Chain Lp

Putative 60S ribosomal protein L44

Chain S4

Transfer RNA; tRNA