IL_8RXH_130

3D structure

PDB id

8RXH (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYO-EM STRUCTURE OF LEISHMANIA MAJOR 80S RIBOSOME WITH A/P/E-site tRNA AND mRNA : PARENTAL STRAIN

Experimental method

ELECTRON MICROSCOPY

Resolution

2.93 Å

Loop

Sequence

G(OMG)C*GCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RXH_130 not in the Motif Atlas

Geometric match to IL_4WF9_042

Geometric discrepancy: 0.1307

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.4

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

215

Unit IDs

8RXH|1|L2|G|685
8RXH|1|L2|OMG|686
8RXH|1|L2|C|687
*
8RXH|1|L2|G|752
8RXH|1|L2|C|753
8RXH|1|L2|U|754

Current chains

Chain L2

LSUb_rRNA_chain_2

Nearby chains

Chain Li

Putative 60S Ribosomal protein L36

Chain SA

40S ribosomal protein S3a